靶向胸苷磷酸化酶的4-氯-3-甲酰基香豆素衍生物的QSAR研究
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Departamento de Farmacia, Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla, Puebla 72000, Pue., Mexico

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QSAR Applied to 4-Chloro-3-formylcoumarin Derivatives Targeting Human Thymidine Phosphorylase
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Departamento de Farmacia, Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla, Puebla 72000, Pue., Mexico

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    摘要:

    背景:香豆素是源于高等植物苯丙素生物合成途径的次生代谢产物。香豆素类衍生物具有多种药理活性,如保肝、抗肿瘤、抗菌、抗结核、抗病毒、抗炎抗凝或抗血栓作用。目的:对一系列4-氯-3-甲酰基香豆素进行了基于计算机的定量构效关系(QSAR)研究。方法:研究得到17个已发表的香豆素的3D结构,计算了它们的理化性质(描述符),并将它们与实验中已知的阻断目标酶活性的抑制浓度联系起来。此研究应用R语言编写的脚本,基于免费的分子模拟软件实现。结果:最终的多元回归模型通过少量的描述符获得了令人满意的结果——都具有统计学意义并对以增强胸苷磷酸化酶活性为靶向的新型3-甲酰香豆素的开发和药效学研究有重要意义。结论:在理论上,此项in silico研究对补充植物医学领域做出了关键贡献。这一步骤在基于民族药理学、临床前或临床水平的植物提取物的体内药理学观察研究,以及鉴定其发挥相应生物活性的确切化学成分的物质基础研究之间。揭示了通过模拟研究改变植物药的理化性质,以增强其与患者体内分子靶点的相互作用的方法。

    Abstract:

    Background: Coumarins are secondary metabolites from the phenylpropanoid-type biosynthesis in higher plants. A plethora of potential phytopharmacological activities have been described for derivatives of the coumarin scaffold: hepatoprotective, antineoplastic, antimicrobial, antituberculosis, antiviral, anti-inflammatory anticoagulant, or antithrombotic effects. Objective: A computer-based quantitative structure – activity relationships (QSAR) study for a series of 4?chloro- 3-formylcoumarins was carried out. Methods: To this end we generated the 3D models of 17 published coumarin structures, calculated their physicochemical properties (descriptors) to correlate them to their experimentally known biological activities measured as inhibition concentrations to block the target enzyme activity. Our proposed approach used free molecular modeling software and applies our scripts written in the programming language R. Results: The final multiple regression models achieved satisfactory results with a small number of descriptors– all of which were statistically significant and meaningful in the field of pharmacodynamics to develop new 3-formylcoumarins with enhanced activities targeting the human thymidine phosphorylase enzyme. Conclusion: On theoretical grounds, our in silico research contributes in a crucial step in the field of complementary phyto-medicine. This step is located between in vivo pharmacological observations of plant extracts on ethnopharmacological, preclinical or controlled clinical levels and the need to identify – at an atomic scale – all those plant ingredients responsible for the biological actions under scrutiny. Our simulations shed light on the modification of phyto-medicine’s physicochemical properties to enhance the interaction with their biomolecular target in the patient’s body.

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  • 在线发布日期: 2022-06-08
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